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John B. Schenkman

Professor of Cell Biology
jschenkm@neuron.uchc.edu

  • B.A., Brooklyn College 
  • Ph.D., State University of New York
  • Cell Biology Graduate Program
  • Not accepting students for Lab Rotations at this time
Dr. John Schenkman
Areas of Interest

The cytochrome P450s are ubiquitous proteins found in most phyla. Several thousand different forms have already been identified. The individual species have large numbers of cytochrome P450 forms. In humans, for example, 57 different forms of cytochrome P450 have been identified in the genome. The mouse genome contains 93 different forms. The different forms of cytochrome P450 can be grouped into families, based upon amino acid sequence identity. In mammals, families 1-3 are generally considered as 'xenobiotic-metabolizing' enzymes, oxidizing the greatest number of drugs and chemicals encountered in the environment, as well as a number of endobiotics like steroids destined for excretion or used in intermediary metabolism of compounds necessary for homeostasis. Most of the families of cytochrome P450 are involved, in one way or another, in steroidogenesis, vitamin metabolism or maintenance of homeostasis in the body. In recent studies, however, it has become apparent that a number of the xenobiotic metabolizing cytochrome P450s are present in the conceptus and the developing embryo and fetus at specific times after conception (Choudhary et al., 2004a; Choudhary et al., 2003; Choudhary et al., 2005), appearing to function as development-influencing gene products (Schenkman et al., 2003).

Mutations in the cytochrome P450 1B1 (CYP1B1) gene in humans results in the disease, Primary Congenital Glaucoma (PCG), which appears to be due to abnormal development of the trabecular meshwork at the angle of the eye. Although the mouse does not develop the same disease phenotype, damage to the mouse orthologous gene does result in similar histologically observed abnormal development of the trabecular meshwork. We have shown that point mutations in the human gene, which in patients cause PCG, result in forms of CYP1B1 that are expressed as a holoenzyme, with lesser stability and lower specific activity toward endobiotics (Choudhary et al., 2004b; Jansson et al., 2001). We have used the mouse to examine the temporal and spatial appearance of Cyp1b1 (the mouse ortholog) protein in mouse eye structures by histological and immunohistological methods (Choudhary et al., 2006) in order to gain an understanding of how the absence of a fully active form of the enzyme might result in the PCG phenotype. We note that, "the distinctive constitutive expression pattern of some CYPs during mouse ontogeny and their presence in human fetal tissues suggests an involvement in morphogenesis and patterning of different embryonic structures. This might occur by modulating the level of ligands required for activation of membrane or nuclear receptors", and it was suggested that such ligands were probably endobiotics of lipophilic properties (Choudhary et al., 2006). Examination of the effects of four different PCG-causing mutations of CYP1B1 on the stability and catalytic activities revealed impairment of these characteristics by the mutations, strongly suggestion diminution of function in the absence of enhanced levels of the enzyme are the cause of the observed PCG phenotype (Choudhary et al., 2008). Toward this observation, it was suggested that CYP1B1 might eventually serve as a potential target for gene therapy of the PCG condition (Choudhary et al., 2009).

Metabolism of different chemicals by cytochrome P450 forms often results in their conversion into active electrophiles that can react with DNA. It is generally accepted that such reactions are the cause of different cancers. In other studies we have been examining the ability to make use of cytochrome P450 forms in electrochemical analysis of the potential of different drugs and environmental pollutants to cause genotoxic effects by virtue of reacting with the DNA in thin films (Estavillo et al., 2003; Munge et al., 2003; Rusling et al., 2008; Zhou et al., 2003). Using microsomes containing cytochrome P450 and cytochrome P450 reductase (CPR) we have been able to show the involvement of CPR in the electrochemical activation of these environmental pollutants by cytochrome P450 forms (Sultana et al., 2005; Sultana et al., 2007). In attempts to make rapid throughput of analyses, arrays have been developed in which multiple forms of activating enzyme could be inserted to take advantage of differences in substrate specificities (Wang et al., 2005). Using the electrochemical method and layer-by-layer formation of interacting cytochrome P450 system components and DNA it could be shown that reactive intermediates were formed which could complex with and damage the DNA (Krishnan et al., 2007; So et al., 2008; So et al., 2007). Arrays for the electrochemical activation of the carcinogen benzo(a)pyrene by multiple forms of cytochrome P450 were developed (Hvastkovs et al., 2007). One could also use microsomes containing mixtures of metabolic enzymes in thin films with DNA for screening compounds for genotoxicity (Krishnan et al., 2008), or pure enzymes, developing methods for screening the DNA (Bajrami et al., 2008; Fundador et al., 2008). We have been monitoring DNA reactivity with different potential toxicants (Bajrami et al., 2009; Hull et al., 2009; Krishnan et al., 2009; Zhao et al., 2009a; Zhao et al., 2009b).

Publications

Selected Publications

Krishnan S, Hvastkovs EG, Bajrami B, Schenkman JB and Rusling JF (2009) Human cyt P450 mediated metabolic toxicity of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) evaluated using electrochemiluminescent arrays. Mol Biosyst 5(2):163-169.

Hull DO, Bajrami B, Jansson I, Schenkman JB and Rusling JF (2009) Characterizing metabolic inhibition using electrochemical enzyme/DNA biosensors. Anal Chem 81(2):716-724.

Choudhary D, Jansson I and Schenkman JB (2009) CYP1B1, a developmental gene with a potential role in glaucoma therapy. Xenobiotica 39:606-615.

Bajrami B, Zhao L, Schenkman JB and Rusling JF (2009) Rapid LC-MS drug metabolite profiling using microsomal enzyme bioreactors in a parallel processing format. Anal Chem 81(24):9921-9929.

Zhao L, Krishnan S, Zhang Y, Schenkman JB and Rusling JF (2009a) Differences in metabolite-mediated toxicity of tamoxifen in rodents versus humans elucidated with DNA/microsome electro-optical arrays and nanoreactors. Chem Res Toxicol 22(2):341-347.

Zhao L, Schenkman JB and Rusling JF (2009b) Screening for reactive metabolites using electro-optical arrays featuring human liver cytosol and microsomal enzyme sources and DNA. Chem Commun (Camb)(36):5386-5388.

Choudhary D, Jansson I, Sarfarazi M and Schenkman JB (2008) Characterization of the biochemical and structural phenotypes of four CYP1B1 mutations observed in individuals with primary congenital glaucoma. Pharmacogenetics and Genomics 18(8):665-676.

Bajrami B, Hvastkovs EG, Jensen GC, Schenkman JB and Rusling JF (2008) Enzyme-DNA biocolloids for DNA adduct and reactive metabolite detection by chromatography-mass spectrometry. Anal Chem 80(4):922-932.

Fundador EV, Choudhary D, Schenkman JB and Rusling JF (2008) Accurate DNA fragment sizing by capillary electrophoresis with laser-induced fluorescence array for detection of sequence specificity of DNA damage. Anal Chem 80(6):2212-2221.

Krishnan S, Hvastkovs EG, Bajrami B, Choudhary D, Schenkman JB and Rusling JF (2008) Synergistic metabolic toxicity screening using microsome/DNA electrochemiluminescent arrays and nanoreactors. Anal Chem 80(14):5279-5285.

Rusling JF, Hvastkovs EG, Hull DO and Schenkman JB (2008) Biochemical applications of ultrathin films of enzymes, polyions and DNA. Chem Commun (Camb)(2):141-154.

So M, Hvastkovs EG, Bajrami B, Schenkman JB and Rusling JF (2008) Electrochemical genotoxicity screening for arylamines bioactivated by N-acetyltransferase. Anal Chem 80(4):1192-1200.

So M, Hvastkovs EG, Schenkman JB and Rusling JF (2007) Electrochemiluminescent/voltammetric toxicity screening sensor using enzyme-generated DNA damage. Biosens Bioelectron 23(4):492-498.

Hvastkovs EG, So M, Krishnan S, Bajrami B, Tarun M, Jansson I, Schenkman JB and Rusling JF (2007) Electrochemiluminescent arrays for cytochrome P450-activated genotoxicity screening. DNA damage from benzo[a]pyrene metabolites. Anal Chem 79(5):1897-1906.

Krishnan S, Hvastkovs EG, Bajrami B, Jansson I, Schenkman JB and Rusling JF (2007) Genotoxicity screening for N-nitroso compounds. Electrochemical and electrochemiluminescent detection of human enzyme-generated DNA damage from N-nitrosopyrrolidine. Chem Commun (Camb)(17):1713-1715.

Sultana N, Schenkman JB and Rusling JF (2007) Direct electrochemistry of cytochrome P450 reductases in surfactant and polyin films. Electroanalysis 19:2499-2506.

Choudhary D, Jansson I, Sarfarazi M and Schenkman JB (2006) Physiological significance and expression of P450s in the developing eye. Drug Metabolism Reviews 38(1-2):337-352.

Choudhary D, Jansson I, Stoilov I, Sarfarazi M and Schenkman JB (2005) Expression patterns of mouse and human CYP orthologs (families 1-4) during development and in different adult tissues. Archives Biochemistry Biophysics 436(1):50-61.

Wang B, Jansson I, Schenkman JB and Rusling JF (2005) Evaluating enzymes that generate genotoxic benzo[a]pyrene metabolites using sensor arrays. Anal Chem 77(5):1361-1367.

Sultana N, Schenkman JB and Rusling JF (2005) Protein film electrochemistry of microsomes genetically enriched in human cytochrome p450 monooxygenases. J Am Chem Soc 127(39):13460-13461.

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rev. 7/10

  
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